microcosmos
What Makes A Microbe Rare?
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Duration: | 11:25 |
Uploaded: | 2024-02-12 |
Last sync: | 2024-12-12 18:30 |
This episode is sponsored by Squarespace. Go to https://squarespace.com/microcosmos to get a free trial and 10% off your first purchase of a website or domain.
In the microcosmos—where the organisms vastly outnumber us, where what we find in a single pool of water can change from day to day—it makes us as what it mean for a microbe to be rare?
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Music by Andrew Huang:
https://www.youtube.com/andrewhuang
Journey to the Microcosmos is a Complexly production.
Find out more at https://www.complexly.com
SOURCES:
https://www.frontiersin.org/articles/10.3389/frpro.2023.1308546/abstract
https://www.wfoissner.at/data_prot/Foissner_Wenzel_2004_3-69.pdf
This video has been dubbed using an artificial voice via https://aloud.area120.google.com to increase accessibility. You can change the audio track language in the Settings menu.
In the microcosmos—where the organisms vastly outnumber us, where what we find in a single pool of water can change from day to day—it makes us as what it mean for a microbe to be rare?
Follow Journey to the Microcosmos:
Twitter: https://twitter.com/journeytomicro
Facebook: https://www.facebook.com/JourneyToMicro
Shop The Microcosmos:
https://www.microcosmos.store
Support the Microcosmos:
http://www.patreon.com/journeytomicro
More from Jam’s Germs:
Instagram: https://www.instagram.com/jam_and_germs
YouTube: https://www.youtube.com/channel/UCn4UedbiTeN96izf-CxEPbg
Hosted by Deboki Chakravarti:
https://www.debokic.com/
Music by Andrew Huang:
https://www.youtube.com/andrewhuang
Journey to the Microcosmos is a Complexly production.
Find out more at https://www.complexly.com
SOURCES:
https://www.frontiersin.org/articles/10.3389/frpro.2023.1308546/abstract
https://www.wfoissner.at/data_prot/Foissner_Wenzel_2004_3-69.pdf
This video has been dubbed using an artificial voice via https://aloud.area120.google.com to increase accessibility. You can change the audio track language in the Settings menu.
This episode is sponsored by Squarespace.
Go to Squarespace.com/microcosmos to save 10% off your first purchase of a website or domain. What makes something rare?
Sure, we can define “rare,” and come up with some kind of threshold that distinguishes between something that’s seen often enough versus something that isn’t. But it gets arbitrary and subjective at some point, doesn’t it? And especially in the microcosmos— where the organisms vastly outnumber us, where what we find in a single pool of water can change from day to day— what does it mean for a microbe to be rare?
James, our master of microscopes, is also a bit of a specialized collector. While his countless samples have turned up all sorts of fascinating creatures, his real specialty is the hairy single-celled eukaryotes known better as ciliates. He gathers water from ponds and lakes and distant lands, and pores over texts both old and new, all to see the vast corners of the ciliated cosmos.
And thanks to him, we have the chance to see ciliates that are so rare that the last time they’ve been seen was in the 1930s. We spent our last episode focused on one of those rare ciliates: the tailed Bryophyllum caudatum. And today we’re going to take a look at a few more so we can better understand what it is that makes them so rare.
This is Apertospathula, a predatory ciliate that feeds on other protists and microscopic animals. And of the ciliates we’re looking at today, it’s one of the only ones that wasn’t last reported back in the 1930s. And that’s because it’s never been reported at all: it’s a new species in this genus.
Buried in its bodies are thousands of prokaryotic endosymbionts. When you look at it in its resting cyst phase, the apertospathula still manages to seem somewhat in motion. That’s the motion of the prokaryotic endosymbionts swirling against each other.
It’s hypnotic, moving just so slowly that it’s hard to tell if the collective movement is real or just a trick of the eyes. That movement might be a way to distribute nutrients around the cyst so that the prokaryotes are treated more evenly. And under a UV light, the individual bodies of those endosymbionts stand out even more, their autofluorescence lighting up the image.
Altogether, it makes the apertospathula rare and spectacular. Looking across all microbes, meaning all microscopic prokaryotes and eukaryotes, it’s estimated that around 1.5-28% of those organisms are rare, marked by low numbers and abundance across most time periods and in most environmental conditions. For James, finding rare microbes feels like he’s found a dodo or a Tasmanian tiger frolicking around in his neighborhood.
And it also feels like a tribute to his microscopy heroes, scientists like Eugene Penard and Alfred Kahl who described and classified the microbial world in the beginning of the 20th century. For James, the passion in their work is still apparent, even nearly a century later. It’s a familiar feeling to our master of microscopes.
So when he finds something that was last reported by them in the 1930s, it means so much to him. This species, Penardiella undulata, was described for the first time by Kahl in 1930, but has never been reported again until James found it in a small pond full of decaying organic matter. The individuals he found were always in the low oxygen sediments.
Kahl also reported this related species, Penardiella interrupta, in 1930. And it had been found once in 2009 before James was able to find four more individuals, all of whom have green endosymbiotic algae. These species all belong to the Penardiella genus, which Kahl constructed and named for Eugene Penard.
So being able to find any feels like a tribute to both scientists at once, all the more special because sightings tend to be very rare. Who knows, perhaps Kahl would have managed to find more of these ciliates in his favorite sampling areas. But Kahl stopped publishing work in 1935, which may have been due to issues with other members of his field.
He briefly returned in 1943 with a publication that combined revisions of his previous work alongside new species found between 1934 and 1940. But a planned follow-up was lost due to World War II, and Kahl died in 1946 of causes that remain unknown. One of the reasons it’s so valuable to continue finding these rare microbes decades later is that we have so many more techniques available to us to study and record them.
We know so much more about DNA and how to study it, which has given us so much more insight into how these organisms function and evolve. But these older microscopists were diligent with the tools they had: their microscope, and the ability to combine words and illustration to describe a world that seemed so alien. Penard described the rare Legendrea bellerophon in 1914, taking immense care with the details and illustrations so that he could capture the various forms of the organism.
The publication ended up being 27 pages long. We can’t help but wonder though, what it would have been like for microscopists back in the day to have the same ability to record high quality footage of microbes like we do today. What would they have chosen to record?
How would they have chosen to film it? What would be the details they would want an audience to see later? We don’t know what they would have wanted to see.
But we do know what James wanted: he wanted to know what would happen if he left Legendrea bellerophon on a sealed slide with no food. He found a cell, pipetted it on a slide with no food, and left it in a humidity chamber. And then he watched and watched and watched… for 34 days.
The organism started out with its tentacles extended, at times moving around in search of something to eat. But by day 34, it was mostly static, surrounded by a constellation of its own parts. Its shape was slightly different, perhaps because it was in need of food.
Unfortunately, the Legendrea eventually disappeared when the Vaseline seal on the slide broke. We don’t know where its future took it. So what is it that makes these ciliates rare?
There are a few traits that James and his collaborator, Professor Genoveva Esteban, have noticed that seem to be consistent across the rare species they find. In general, these rare microbes are likely to have something that limits their growth, keeping their numbers small overall. There are various ways that can happen: one is that they might be anaerobic, which is less efficient compared to aerobic metabolism, and also reliant on food that is harder to come by.
The Legendrea bellerophon is like this. It can spend ages— 34 days even— waiting for its very specific diet of microscopic animals like rotifers and gastrotrichs. Those animals aren’t thriving in the anoxic environments Legendrea prefer to live in, so the ciliate must be willing to wait.
And in turn, it will have a slower growth rate. So the fact that they can survive so long without food might actually be connected to why they’re so rare. At least, that’s one possible explanation.
And in a world filled with so many organisms and so many ways to be rare, there are likely many more reasons and ways for an organism to be rare. We can only work at uncovering more of them. Thank you for coming on this journey with us as we explore the unseen world that surrounds us.
And thank you to Squarespace for sponsoring this episode. Squarespace offers a robust online platform that empowers small businesses to create their own websites. Whether you're just starting out or looking to expand your existing venture, Squarespace provides all the essential features you need to succeed.
Maybe you're a talented yoga instructor and want to establish a captivating online presence for your studio. Squarespace provides you with the tools to design a beautiful and professional website that reflects your studio's tranquil ambiance and captures the essence of your teaching style. Utilizing Squarespace's third-party extensions, you can effortlessly manage class schedules, streamline bookings, and offer online yoga sessions to students around the globe.
And if you're interested in sharing your yoga knowledge and inspiration with a broader audience, Squarespace makes it easy to integrate a blog seamlessly into your website. You can enlighten your readers with insightful articles, yoga techniques, and mindfulness practices, fostering a deeper connection with your community. You can even engage with your students through threaded comments and replies as you encourage discussions, offer guidance, and celebrate their progress as they embark on their yoga journey.
You can sign up today for a free trial at Squarespace.com. And when you're ready to launch, visit squarespace.com/microcosmos to enjoy a 10% discount on your first purchase of a website or domain. We’d also like to say thank you to each and every one of our Patrons.
Some of their names are on the screen right now, and these are the people that make this channel, and videos like this possible and we are so so grateful. If you’d like to become one of them, you can go to patreon.com/journeytomicro. If you’d like to see more from our Master of Microscopes, James Weiss, you can check out Jam & Germs on Instagram, and if you’d like to see more from us, there’s probably a subscribe button somewhere nearby.
Go to Squarespace.com/microcosmos to save 10% off your first purchase of a website or domain. What makes something rare?
Sure, we can define “rare,” and come up with some kind of threshold that distinguishes between something that’s seen often enough versus something that isn’t. But it gets arbitrary and subjective at some point, doesn’t it? And especially in the microcosmos— where the organisms vastly outnumber us, where what we find in a single pool of water can change from day to day— what does it mean for a microbe to be rare?
James, our master of microscopes, is also a bit of a specialized collector. While his countless samples have turned up all sorts of fascinating creatures, his real specialty is the hairy single-celled eukaryotes known better as ciliates. He gathers water from ponds and lakes and distant lands, and pores over texts both old and new, all to see the vast corners of the ciliated cosmos.
And thanks to him, we have the chance to see ciliates that are so rare that the last time they’ve been seen was in the 1930s. We spent our last episode focused on one of those rare ciliates: the tailed Bryophyllum caudatum. And today we’re going to take a look at a few more so we can better understand what it is that makes them so rare.
This is Apertospathula, a predatory ciliate that feeds on other protists and microscopic animals. And of the ciliates we’re looking at today, it’s one of the only ones that wasn’t last reported back in the 1930s. And that’s because it’s never been reported at all: it’s a new species in this genus.
Buried in its bodies are thousands of prokaryotic endosymbionts. When you look at it in its resting cyst phase, the apertospathula still manages to seem somewhat in motion. That’s the motion of the prokaryotic endosymbionts swirling against each other.
It’s hypnotic, moving just so slowly that it’s hard to tell if the collective movement is real or just a trick of the eyes. That movement might be a way to distribute nutrients around the cyst so that the prokaryotes are treated more evenly. And under a UV light, the individual bodies of those endosymbionts stand out even more, their autofluorescence lighting up the image.
Altogether, it makes the apertospathula rare and spectacular. Looking across all microbes, meaning all microscopic prokaryotes and eukaryotes, it’s estimated that around 1.5-28% of those organisms are rare, marked by low numbers and abundance across most time periods and in most environmental conditions. For James, finding rare microbes feels like he’s found a dodo or a Tasmanian tiger frolicking around in his neighborhood.
And it also feels like a tribute to his microscopy heroes, scientists like Eugene Penard and Alfred Kahl who described and classified the microbial world in the beginning of the 20th century. For James, the passion in their work is still apparent, even nearly a century later. It’s a familiar feeling to our master of microscopes.
So when he finds something that was last reported by them in the 1930s, it means so much to him. This species, Penardiella undulata, was described for the first time by Kahl in 1930, but has never been reported again until James found it in a small pond full of decaying organic matter. The individuals he found were always in the low oxygen sediments.
Kahl also reported this related species, Penardiella interrupta, in 1930. And it had been found once in 2009 before James was able to find four more individuals, all of whom have green endosymbiotic algae. These species all belong to the Penardiella genus, which Kahl constructed and named for Eugene Penard.
So being able to find any feels like a tribute to both scientists at once, all the more special because sightings tend to be very rare. Who knows, perhaps Kahl would have managed to find more of these ciliates in his favorite sampling areas. But Kahl stopped publishing work in 1935, which may have been due to issues with other members of his field.
He briefly returned in 1943 with a publication that combined revisions of his previous work alongside new species found between 1934 and 1940. But a planned follow-up was lost due to World War II, and Kahl died in 1946 of causes that remain unknown. One of the reasons it’s so valuable to continue finding these rare microbes decades later is that we have so many more techniques available to us to study and record them.
We know so much more about DNA and how to study it, which has given us so much more insight into how these organisms function and evolve. But these older microscopists were diligent with the tools they had: their microscope, and the ability to combine words and illustration to describe a world that seemed so alien. Penard described the rare Legendrea bellerophon in 1914, taking immense care with the details and illustrations so that he could capture the various forms of the organism.
The publication ended up being 27 pages long. We can’t help but wonder though, what it would have been like for microscopists back in the day to have the same ability to record high quality footage of microbes like we do today. What would they have chosen to record?
How would they have chosen to film it? What would be the details they would want an audience to see later? We don’t know what they would have wanted to see.
But we do know what James wanted: he wanted to know what would happen if he left Legendrea bellerophon on a sealed slide with no food. He found a cell, pipetted it on a slide with no food, and left it in a humidity chamber. And then he watched and watched and watched… for 34 days.
The organism started out with its tentacles extended, at times moving around in search of something to eat. But by day 34, it was mostly static, surrounded by a constellation of its own parts. Its shape was slightly different, perhaps because it was in need of food.
Unfortunately, the Legendrea eventually disappeared when the Vaseline seal on the slide broke. We don’t know where its future took it. So what is it that makes these ciliates rare?
There are a few traits that James and his collaborator, Professor Genoveva Esteban, have noticed that seem to be consistent across the rare species they find. In general, these rare microbes are likely to have something that limits their growth, keeping their numbers small overall. There are various ways that can happen: one is that they might be anaerobic, which is less efficient compared to aerobic metabolism, and also reliant on food that is harder to come by.
The Legendrea bellerophon is like this. It can spend ages— 34 days even— waiting for its very specific diet of microscopic animals like rotifers and gastrotrichs. Those animals aren’t thriving in the anoxic environments Legendrea prefer to live in, so the ciliate must be willing to wait.
And in turn, it will have a slower growth rate. So the fact that they can survive so long without food might actually be connected to why they’re so rare. At least, that’s one possible explanation.
And in a world filled with so many organisms and so many ways to be rare, there are likely many more reasons and ways for an organism to be rare. We can only work at uncovering more of them. Thank you for coming on this journey with us as we explore the unseen world that surrounds us.
And thank you to Squarespace for sponsoring this episode. Squarespace offers a robust online platform that empowers small businesses to create their own websites. Whether you're just starting out or looking to expand your existing venture, Squarespace provides all the essential features you need to succeed.
Maybe you're a talented yoga instructor and want to establish a captivating online presence for your studio. Squarespace provides you with the tools to design a beautiful and professional website that reflects your studio's tranquil ambiance and captures the essence of your teaching style. Utilizing Squarespace's third-party extensions, you can effortlessly manage class schedules, streamline bookings, and offer online yoga sessions to students around the globe.
And if you're interested in sharing your yoga knowledge and inspiration with a broader audience, Squarespace makes it easy to integrate a blog seamlessly into your website. You can enlighten your readers with insightful articles, yoga techniques, and mindfulness practices, fostering a deeper connection with your community. You can even engage with your students through threaded comments and replies as you encourage discussions, offer guidance, and celebrate their progress as they embark on their yoga journey.
You can sign up today for a free trial at Squarespace.com. And when you're ready to launch, visit squarespace.com/microcosmos to enjoy a 10% discount on your first purchase of a website or domain. We’d also like to say thank you to each and every one of our Patrons.
Some of their names are on the screen right now, and these are the people that make this channel, and videos like this possible and we are so so grateful. If you’d like to become one of them, you can go to patreon.com/journeytomicro. If you’d like to see more from our Master of Microscopes, James Weiss, you can check out Jam & Germs on Instagram, and if you’d like to see more from us, there’s probably a subscribe button somewhere nearby.