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| MLA Full: | "What Is a Good Gut Microbiome, Anyway?" YouTube, uploaded by SciShow, 14 September 2026, www.youtube.com/watch?v=gB6OvhT_KYs. |
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| APA Full: | SciShow. (2026, September 14). What Is a Good Gut Microbiome, Anyway? [Video]. YouTube. https://youtube.com/watch?v=gB6OvhT_KYs |
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SciShow, "What Is a Good Gut Microbiome, Anyway?", September 14, 2026, YouTube, 11:58, https://youtube.com/watch?v=gB6OvhT_KYs. |
Be kind to yourself this year. Using Zocdoc is free - visit our sponsor https://zocdoc.com/SciShow to find and instantly book an appointment with a top-rated, in-network doctor today.
If you have ulcerative colitis, Crohn's disease, or any number of gut issues, you've probably wondered what makes a good gut microbiome and how you can get one. Whether it's super fecal microbiota donors or diet and exercise, there's some evidence-backed options.
Hosted by: Ceri Riley (she/her)
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Huge thanks go to the following Patreon supporters for helping us keep SciShow free for everyone forever: Shaji John, Timos Gies, Jon Coffman, Anita, Anne Herrington, Ashley Moquin, yeyette, David Johnston, Cye Stoner, Jp Lynch, Bethany Matthews, Chris Curry, J.V. Rosenbalm, Blood Doctor Kelly, Toyas Dhake, Reed Spilmann, Garrett Galloway, Friso, Lyndsay Brown, Jeremy Mattern, Jaap Westera, Matt Curls, Eric Jensen, Chris Mackey, Adam Brainard, Jacob Puthoff, Piya Shedden, Steve Gums, Alex Hackman, Kevin Knupp, Chris Peters, Kevin Bealer, Joseph Ruf, Jason A Saslow
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Sources:
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If you have ulcerative colitis, Crohn's disease, or any number of gut issues, you've probably wondered what makes a good gut microbiome and how you can get one. Whether it's super fecal microbiota donors or diet and exercise, there's some evidence-backed options.
Hosted by: Ceri Riley (she/her)
----------
Support us for $8/month on Patreon and keep SciShow going!
https://www.patreon.com/scishow
Or support us directly: https://complexly.com/support
Join our SciShow email list to get the latest news and highlights:
https://mailchi.mp/scishow/email
----------
Huge thanks go to the following Patreon supporters for helping us keep SciShow free for everyone forever: Shaji John, Timos Gies, Jon Coffman, Anita, Anne Herrington, Ashley Moquin, yeyette, David Johnston, Cye Stoner, Jp Lynch, Bethany Matthews, Chris Curry, J.V. Rosenbalm, Blood Doctor Kelly, Toyas Dhake, Reed Spilmann, Garrett Galloway, Friso, Lyndsay Brown, Jeremy Mattern, Jaap Westera, Matt Curls, Eric Jensen, Chris Mackey, Adam Brainard, Jacob Puthoff, Piya Shedden, Steve Gums, Alex Hackman, Kevin Knupp, Chris Peters, Kevin Bealer, Joseph Ruf, Jason A Saslow
----------
Looking for SciShow elsewhere on the internet?
SciShow Tangents Podcast: https://scishow-tangents.simplecast.com/
TikTok: https://www.tiktok.com/@scishow
Instagram: http://instagram.com/thescishow
Facebook: http://www.facebook.com/scishow
Bluesky: https://bsky.app/profile/scishow.bsky.social
#SciShow #science #education #learning #complexly
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Sources:
https://docs.google.com/document/d/e/2PACX-1vQsM1WkJDEvamrUWwwh-qfeg-pPf19UovWEdWOLCR4G-iHTdNM4Kv6ZxCQp5epNIe7h5SNgaU1-_neW/pub
If we all had guts that did what guts are supposed to do, we wouldn’t be making this video.
Unfortunately, several of the people who make SciShow are all too aware that their guts could be doing a much better job. And since you’re watching this video, you might also be a member of the Slacking Gut Club.
Membership comes with inflammatory bowel disease, or if you’re a top tier member, C. diff infections! But it might not be your gut’s fault. This stuff often comes down to the tiny organisms that call your gut home: your gut microbiota.
Some people just have worse gut microbiota than others. And if you’re one of those folks, here’s what researchers know about how to get a better one. [♪ INTRO] Welcome to the Slacking Gut Club orientation. There are a lot of new names and …faces? …flagella? to get to know.
A healthy gut microbiota has up to 2,000 different species of bacteria, viruses, archaea, and fungi in it. And the microbiome is the collective genes and products of all those guys. Your gut microbiome helps maintain all sorts of important stuff in your body, like your metabolism, mucus barriers, and immune responses.
So if you’re lucky, you have thousands of different kinds of microorganisms inside your gut right now keeping everything running smoothly. And luck is definitely a factor. You’re not totally in control of who resides in your gut.
You get some of your microbiota from birth, some from your diet, and some from hospitalizations or conditions you pick up throughout the years. Plus a ton of other factors that come with living. So everybody’s gut microbiome is different.
But if you have one that puts you solidly in the Slacking Gut Club, you’d probably like to turn it into a better one. And there are experts trying to help make that happen for you... and me. The idea that’s gained the most traction is known as microbiota replacement therapy.
If you have medical concerns related to your sub-par gut microbiota, you can sample someone else’s healthier gut microbiota and take on its good qualities. Technically you can do this in a few ways. But some are more effective than others.
Like, you can try to seed a good gut microbiota with over-the-counter probiotics. This is a pretty easy and accessible option. But the downside is: data’s not really on your side.
So far, probiotics have not consistently been found to help much with your gut microbiome. One problem is that we don’t know yet how to grow some gut microbes outside your body. And if we can’t grow them, we can’t put them into a probiotic.
Also, there are only so many microbes in probiotics. And generally, healthy guts have a ton of microbial diversity in them that you won’t get from that limited boost. Which means probiotics might not be the quick fix you were hoping for.
Instead, you might find success with a fecal microbiota transplant. That’s when you get a person to donate their poop, complete with gut microbiota galore. Then, the professionals water down your donor poop and filter that mixture into a syringe to shoot it up your butt.
Not once. Not twice. But lots of times for weeks.
What’s a little sharing poop between friends with the help of some doctors? Am I right? And, I promise it’s not joke, it really is healing.
Depending on what problem you’re trying to solve with the transplant, the treatment can work wonders. For example, a 2015 paper reported that patients with active ulcerative colitis received fecal microbiota transplants and achieved remission in a matter of weeks. Those folks had significantly less inflammation down there, and some even had no inflammation by the end of the study.
Now, the effects might not last forever. But they still can help you live a healthier, happier life for years. And when the effect starts wearing off, you can get another transplant to prolong the benefits.
Just think about it like pen pals, but poop pals. So I’m a science communicator and I’m used to talking about poop, and it can be off-putting to think about someone else’s poop inside of you. But you have to give it to those scientific results!
And there may be more palatable transplant options coming out. Researchers are working on modifying this therapy into capsules, so you can swallow a pill instead of going through the whole “syringe full of poop water” ordeal. The thing is, though, the ick factor isn’t the only thing keeping us all from perfect poops.
Unfortunately, not all fecal transplants are equally curative. In that 2015 study, only 9 of the 38 patients who got a fecal microbiota transplant entered remission. And the researchers have some ideas about why.
For one thing, timing might be a factor. Three of the four patients who had just started reporting symptoms of ulcerative colitis entered remission after treatment. And three quarters is a much higher success rate than the six out of 34 patients who achieved remission after longer term ulcerative colitis.
So if you get a fecal microbiota transplant in your first year of symptoms, you might have better chances of remission. But that’s not the only factor here. There’s also microbial diversity to consider.
Research suggests that the benefit you get from a fecal microbiota transplant may be dependent on getting a good donor with a really diverse microbiome. Back to that 2015 study, of the nine patients who achieved remission, seven used the same donor. I guess you could call this guy a super pooper!
I mean, the scientists didn’t, but we could. The researchers actually used the term super-donor, and these folks have particularly diverse gut microbiomes. And it’s not like the rest of us, non super-doners, are walking around with only a few kinds of microscopic gut roommates.
One study found that stool donors who don’t produce responses in their recipients still have almost 800 species to brag about! It’s just that the donors who get remission results have more like 950 species. And that extra diversity in donor microbes really seems to make a difference.
Now, if you’re trying to increase the microbial diversity in your gut for best results, you might consider combining multiple poops from different donors. But when it comes to remission, a rag tag team of average poopers doesn’t compare to a single super donor. Some experts are taking this super donor idea and running with it.
But before we get to what they’re doing with that super poop, it’s time for a quick ad. Thanks to Zocdoc for sponsoring this SciShow video! Zocdoc is a free website where you can search and compare high quality, in-network doctors and click to instantly book an appointment.
With over 150,000 providers across more than 200 specialties in all 50 US states, you can book an appointment within 24 to 72 hours. When the SciShow script writer on staff has medical needs, she goes to Zocdoc first. She’s used them to find a new doctor when she moved to a new city.
Then again when her amazing doctor she found on Zocdoc switched practices and she needed to start over again. And she used them for her husband too when he had a medical need crop up suddenly. With Zocdoc, she’s been able to find professionals that specialize in the stuff she needs.
And make sure they’re in network with her insurance. And book an appointment in a few minutes for a date that’s not a year out. You don’t have to sit on the phone listening to the worst hold music you’ve ever heard or have a 20 minute long conversation with a bot.
Zocdoc lets you handle everything yourself on their free, straightforward website. With a really short time commitment on Zocdoc, you can get the ball rolling today. Taking care of your health just got easier.
Head to zocdoc.com/SCISHOW to get started and check that appointment off your to-do list. Thanks again to Zocdoc for sponsoring today’s video! The way fecal donations work today, donors already need to be pre-screened to make sure they don’t have any nasty bugs in them that would cause more harm than good.
So that step could be expanded to screen for the presence of the most beneficial microbes. In a perfect world, we could identify super donors and use the best poop for all fecal microbiota transplants. We just need to know which species are good to have around and which should be avoided.
Researchers have identified a couple of kinds of bacteria that generally show up when patients don’t achieve remission. Some of the microbes you’d want to keep around are classified as Clostridium cluster IV bacteria. These bacteria, associated with prolonged clinical remission from inflammatory bowel disease, are known for their work supporting your immune system.
So they’re top notch microbes. But there are a lot of them in that giant category. And if you were searching for one keystone gut species that you really want in your donor stool, that species would depend on what problem you’re trying to solve.
For example, if you’re getting a fecal microbiota transplant because of your IBS, maybe you’d want to place your bets on Bifidobacterium. It can be tempting to work toward highly personalized therapies that focus on specific microbes. But not all experts are on board with that idea because some say species richness is more important than any specific species being transferred.
If we do make our way toward more personalized fecal microbiota transplants, maybe it would look less like worrying about which species are transplanted and more like ensuring that the donors and recipients are compatible. Your gut microbiota influences your immune system. And your immune system influences your gut microbiota.
And if your immune system mounts a supercharged response to the transplanted microbes, you may just be incompatible with that donor. Luckily, there are other ways to modify your gut microbiota that don’t involve transplants. You can totally change your gut microbiota within 24 hours by changing what you eat.
In a study published in the journal “Nature,” volunteers began eating either entirely animal based foods, with the exception of coffee, or entirely plant based foods. None of them had been following those diets beforehand and they all measurably changed what they ate during the study. People in the animal group added fat and protein to their overall food intake.
And people in the plant group added fiber. After just five days, their gut microbes started resembling what you’d see in carnivores and herbivores. Not just by increasing or decreasing the proportions of microbes they already had, but also by introducing totally new ones.
The animal based diet had a bigger effect on how many kinds of microbes increased or decreased in abundance. But a lot of change isn’t necessarily good. For example, there’s one genus that happens to be associated with remission of Crohn’s disease.
And for at least one of the animal eaters, the genus decreased. So an animal based diet might be lacking some positive gut microbes. And what’s worse, it might promote some negative ones.
People who ate the animal based diet had more microbes associated with inflammatory bowel disease. So please talk to your doctor before making any drastic changes. But this data suggests you might lean on plants to help create a nice environment in your gut.
And an important caveat is that the changes to your gut microbiota go away almost as fast as they arrive. So you do have to keep up these diets to maintain the effects. And if changing your diet is impractical or impossible for you, there’s still another trick you can try.
Exercise has also been shown to quickly change your gut microbiota. In studies, excercise has changed the composition of gut microbiota in rodents and increased its diversity in professional athletes. But I’m assuming that you, like me, are not a rodent or a professional athlete.
So here’s some research on amateur runners that might be more relevant to your life, my life, you know: The study, published in the journal “Frontiers in Microbiology,” found that running just one half marathon changed the composition of gut microbiota in the people who participated. That’s based on samples taken before and after the race. So literally one day made a difference.
As for which microbes changed, one example is an increase in a type of bacteria that helps your cells perform their basic functions, like signaling, storing energy, and maintaining their membranes. As if you needed another reason to exercise. But in that study, they didn’t separate the effects of diet and exercise.
So that half marathon alone didn’t necessarily cause all of those changes. Remember, your gut microbiome is unique to you just like mine is unique to me. So you might have to go through a period of bouncing ideas around with your doctor and trying things out.
Whether it’s a new diet, new exercise, or finding a compatible super donor for your next fecal microbiota transplant, there are a lot of ways to take care of your gut. As the super donor researchers say, it’s not a “one stool to rule them all” approach. [♪ OUTRO]
Unfortunately, several of the people who make SciShow are all too aware that their guts could be doing a much better job. And since you’re watching this video, you might also be a member of the Slacking Gut Club.
Membership comes with inflammatory bowel disease, or if you’re a top tier member, C. diff infections! But it might not be your gut’s fault. This stuff often comes down to the tiny organisms that call your gut home: your gut microbiota.
Some people just have worse gut microbiota than others. And if you’re one of those folks, here’s what researchers know about how to get a better one. [♪ INTRO] Welcome to the Slacking Gut Club orientation. There are a lot of new names and …faces? …flagella? to get to know.
A healthy gut microbiota has up to 2,000 different species of bacteria, viruses, archaea, and fungi in it. And the microbiome is the collective genes and products of all those guys. Your gut microbiome helps maintain all sorts of important stuff in your body, like your metabolism, mucus barriers, and immune responses.
So if you’re lucky, you have thousands of different kinds of microorganisms inside your gut right now keeping everything running smoothly. And luck is definitely a factor. You’re not totally in control of who resides in your gut.
You get some of your microbiota from birth, some from your diet, and some from hospitalizations or conditions you pick up throughout the years. Plus a ton of other factors that come with living. So everybody’s gut microbiome is different.
But if you have one that puts you solidly in the Slacking Gut Club, you’d probably like to turn it into a better one. And there are experts trying to help make that happen for you... and me. The idea that’s gained the most traction is known as microbiota replacement therapy.
If you have medical concerns related to your sub-par gut microbiota, you can sample someone else’s healthier gut microbiota and take on its good qualities. Technically you can do this in a few ways. But some are more effective than others.
Like, you can try to seed a good gut microbiota with over-the-counter probiotics. This is a pretty easy and accessible option. But the downside is: data’s not really on your side.
So far, probiotics have not consistently been found to help much with your gut microbiome. One problem is that we don’t know yet how to grow some gut microbes outside your body. And if we can’t grow them, we can’t put them into a probiotic.
Also, there are only so many microbes in probiotics. And generally, healthy guts have a ton of microbial diversity in them that you won’t get from that limited boost. Which means probiotics might not be the quick fix you were hoping for.
Instead, you might find success with a fecal microbiota transplant. That’s when you get a person to donate their poop, complete with gut microbiota galore. Then, the professionals water down your donor poop and filter that mixture into a syringe to shoot it up your butt.
Not once. Not twice. But lots of times for weeks.
What’s a little sharing poop between friends with the help of some doctors? Am I right? And, I promise it’s not joke, it really is healing.
Depending on what problem you’re trying to solve with the transplant, the treatment can work wonders. For example, a 2015 paper reported that patients with active ulcerative colitis received fecal microbiota transplants and achieved remission in a matter of weeks. Those folks had significantly less inflammation down there, and some even had no inflammation by the end of the study.
Now, the effects might not last forever. But they still can help you live a healthier, happier life for years. And when the effect starts wearing off, you can get another transplant to prolong the benefits.
Just think about it like pen pals, but poop pals. So I’m a science communicator and I’m used to talking about poop, and it can be off-putting to think about someone else’s poop inside of you. But you have to give it to those scientific results!
And there may be more palatable transplant options coming out. Researchers are working on modifying this therapy into capsules, so you can swallow a pill instead of going through the whole “syringe full of poop water” ordeal. The thing is, though, the ick factor isn’t the only thing keeping us all from perfect poops.
Unfortunately, not all fecal transplants are equally curative. In that 2015 study, only 9 of the 38 patients who got a fecal microbiota transplant entered remission. And the researchers have some ideas about why.
For one thing, timing might be a factor. Three of the four patients who had just started reporting symptoms of ulcerative colitis entered remission after treatment. And three quarters is a much higher success rate than the six out of 34 patients who achieved remission after longer term ulcerative colitis.
So if you get a fecal microbiota transplant in your first year of symptoms, you might have better chances of remission. But that’s not the only factor here. There’s also microbial diversity to consider.
Research suggests that the benefit you get from a fecal microbiota transplant may be dependent on getting a good donor with a really diverse microbiome. Back to that 2015 study, of the nine patients who achieved remission, seven used the same donor. I guess you could call this guy a super pooper!
I mean, the scientists didn’t, but we could. The researchers actually used the term super-donor, and these folks have particularly diverse gut microbiomes. And it’s not like the rest of us, non super-doners, are walking around with only a few kinds of microscopic gut roommates.
One study found that stool donors who don’t produce responses in their recipients still have almost 800 species to brag about! It’s just that the donors who get remission results have more like 950 species. And that extra diversity in donor microbes really seems to make a difference.
Now, if you’re trying to increase the microbial diversity in your gut for best results, you might consider combining multiple poops from different donors. But when it comes to remission, a rag tag team of average poopers doesn’t compare to a single super donor. Some experts are taking this super donor idea and running with it.
But before we get to what they’re doing with that super poop, it’s time for a quick ad. Thanks to Zocdoc for sponsoring this SciShow video! Zocdoc is a free website where you can search and compare high quality, in-network doctors and click to instantly book an appointment.
With over 150,000 providers across more than 200 specialties in all 50 US states, you can book an appointment within 24 to 72 hours. When the SciShow script writer on staff has medical needs, she goes to Zocdoc first. She’s used them to find a new doctor when she moved to a new city.
Then again when her amazing doctor she found on Zocdoc switched practices and she needed to start over again. And she used them for her husband too when he had a medical need crop up suddenly. With Zocdoc, she’s been able to find professionals that specialize in the stuff she needs.
And make sure they’re in network with her insurance. And book an appointment in a few minutes for a date that’s not a year out. You don’t have to sit on the phone listening to the worst hold music you’ve ever heard or have a 20 minute long conversation with a bot.
Zocdoc lets you handle everything yourself on their free, straightforward website. With a really short time commitment on Zocdoc, you can get the ball rolling today. Taking care of your health just got easier.
Head to zocdoc.com/SCISHOW to get started and check that appointment off your to-do list. Thanks again to Zocdoc for sponsoring today’s video! The way fecal donations work today, donors already need to be pre-screened to make sure they don’t have any nasty bugs in them that would cause more harm than good.
So that step could be expanded to screen for the presence of the most beneficial microbes. In a perfect world, we could identify super donors and use the best poop for all fecal microbiota transplants. We just need to know which species are good to have around and which should be avoided.
Researchers have identified a couple of kinds of bacteria that generally show up when patients don’t achieve remission. Some of the microbes you’d want to keep around are classified as Clostridium cluster IV bacteria. These bacteria, associated with prolonged clinical remission from inflammatory bowel disease, are known for their work supporting your immune system.
So they’re top notch microbes. But there are a lot of them in that giant category. And if you were searching for one keystone gut species that you really want in your donor stool, that species would depend on what problem you’re trying to solve.
For example, if you’re getting a fecal microbiota transplant because of your IBS, maybe you’d want to place your bets on Bifidobacterium. It can be tempting to work toward highly personalized therapies that focus on specific microbes. But not all experts are on board with that idea because some say species richness is more important than any specific species being transferred.
If we do make our way toward more personalized fecal microbiota transplants, maybe it would look less like worrying about which species are transplanted and more like ensuring that the donors and recipients are compatible. Your gut microbiota influences your immune system. And your immune system influences your gut microbiota.
And if your immune system mounts a supercharged response to the transplanted microbes, you may just be incompatible with that donor. Luckily, there are other ways to modify your gut microbiota that don’t involve transplants. You can totally change your gut microbiota within 24 hours by changing what you eat.
In a study published in the journal “Nature,” volunteers began eating either entirely animal based foods, with the exception of coffee, or entirely plant based foods. None of them had been following those diets beforehand and they all measurably changed what they ate during the study. People in the animal group added fat and protein to their overall food intake.
And people in the plant group added fiber. After just five days, their gut microbes started resembling what you’d see in carnivores and herbivores. Not just by increasing or decreasing the proportions of microbes they already had, but also by introducing totally new ones.
The animal based diet had a bigger effect on how many kinds of microbes increased or decreased in abundance. But a lot of change isn’t necessarily good. For example, there’s one genus that happens to be associated with remission of Crohn’s disease.
And for at least one of the animal eaters, the genus decreased. So an animal based diet might be lacking some positive gut microbes. And what’s worse, it might promote some negative ones.
People who ate the animal based diet had more microbes associated with inflammatory bowel disease. So please talk to your doctor before making any drastic changes. But this data suggests you might lean on plants to help create a nice environment in your gut.
And an important caveat is that the changes to your gut microbiota go away almost as fast as they arrive. So you do have to keep up these diets to maintain the effects. And if changing your diet is impractical or impossible for you, there’s still another trick you can try.
Exercise has also been shown to quickly change your gut microbiota. In studies, excercise has changed the composition of gut microbiota in rodents and increased its diversity in professional athletes. But I’m assuming that you, like me, are not a rodent or a professional athlete.
So here’s some research on amateur runners that might be more relevant to your life, my life, you know: The study, published in the journal “Frontiers in Microbiology,” found that running just one half marathon changed the composition of gut microbiota in the people who participated. That’s based on samples taken before and after the race. So literally one day made a difference.
As for which microbes changed, one example is an increase in a type of bacteria that helps your cells perform their basic functions, like signaling, storing energy, and maintaining their membranes. As if you needed another reason to exercise. But in that study, they didn’t separate the effects of diet and exercise.
So that half marathon alone didn’t necessarily cause all of those changes. Remember, your gut microbiome is unique to you just like mine is unique to me. So you might have to go through a period of bouncing ideas around with your doctor and trying things out.
Whether it’s a new diet, new exercise, or finding a compatible super donor for your next fecal microbiota transplant, there are a lot of ways to take care of your gut. As the super donor researchers say, it’s not a “one stool to rule them all” approach. [♪ OUTRO]







